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Cluster: HRGMv2_1815_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1815_12 HRGMv2_1815_12_10 9222 10658 + GT20
TF HRGMv2_1815_12 HRGMv2_1815_12_11 11677 12027 + FlhD
TF HRGMv2_1815_12 HRGMv2_1815_12_12 12027 12605 + FlhC
TC HRGMv2_1815_12 HRGMv2_1815_12_13 12738 13625 + 1.A.30.1.1
TC HRGMv2_1815_12 HRGMv2_1815_12_14 13622 14563 + 1.A.30.1.1
STP HRGMv2_1815_12 HRGMv2_1815_12_15 14569 16566 + CheW | CheY-binding | H-kinase_dim | HATPase_c
STP HRGMv2_1815_12 HRGMv2_1815_12_16 16590 17087 + CheW
TC HRGMv2_1815_12 HRGMv2_1815_12_17 17249 18919 + 1.B.52.2.1
TC HRGMv2_1815_12 HRGMv2_1815_12_18 19125 20687 + 1.B.52.2.1
TC HRGMv2_1815_12 HRGMv2_1815_12_19 20794 22470 + 1.B.52.2.1
Gene ID: HRGMv2_1815_12_10
Type: CAZyme
Location: 9222 - 10658 (+)
Gene ID: HRGMv2_1815_12_11
Type: TF
Location: 11677 - 12027 (+)
Gene ID: HRGMv2_1815_12_12
Type: TF
Location: 12027 - 12605 (+)
Gene ID: HRGMv2_1815_12_13
Type: TC
Location: 12738 - 13625 (+)
Gene ID: HRGMv2_1815_12_14
Type: TC
Location: 13622 - 14563 (+)
Gene ID: HRGMv2_1815_12_15
Type: STP
Location: 14569 - 16566 (+)
Gene ID: HRGMv2_1815_12_16
Type: STP
Location: 16590 - 17087 (+)
Gene ID: HRGMv2_1815_12_17
Type: TC
Location: 17249 - 18919 (+)
Gene ID: HRGMv2_1815_12_18
Type: TC
Location: 19125 - 20687 (+)
Gene ID: HRGMv2_1815_12_19
Type: TC
Location: 20794 - 22470 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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