Cluster: HRGMv2_1815_CGC34
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1815
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1815_11 | HRGMv2_1815_11_11 | 8108 | 9103 | + | GT2 |
| pfam | HRGMv2_1815_11 | HRGMv2_1815_11_12 | 9100 | 11082 | + | Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd |
| pfam | HRGMv2_1815_11 | HRGMv2_1815_11_13 | 11079 | 11996 | + | Polysacc_deac_1 |
| CAZyme | HRGMv2_1815_11 | HRGMv2_1815_11_14 | 11987 | 13648 | + | GT83 |
| TC | HRGMv2_1815_11 | HRGMv2_1815_11_15 | 13648 | 13971 | + | 2.A.7.22.2 |
| TC | HRGMv2_1815_11 | HRGMv2_1815_11_16 | 13968 | 14336 | + | 2.A.7.22.2 |
Gene ID: HRGMv2_1815_11_11
Type: CAZyme
Location: 8108 - 9103 (+)
Type: CAZyme
Location: 8108 - 9103 (+)
Gene ID: HRGMv2_1815_11_12
Type: pfam
Location: 9100 - 11082 (+)
Type: pfam
Location: 9100 - 11082 (+)
Gene ID: HRGMv2_1815_11_13
Type: pfam
Location: 11079 - 11996 (+)
Type: pfam
Location: 11079 - 11996 (+)
Gene ID: HRGMv2_1815_11_14
Type: CAZyme
Location: 11987 - 13648 (+)
Type: CAZyme
Location: 11987 - 13648 (+)
Gene ID: HRGMv2_1815_11_15
Type: TC
Location: 13648 - 13971 (+)
Type: TC
Location: 13648 - 13971 (+)
Gene ID: HRGMv2_1815_11_16
Type: TC
Location: 13968 - 14336 (+)
Type: TC
Location: 13968 - 14336 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea brenneri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.