Cluster: HRGMv2_1815_CGC26
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1815
- CGC Family ID: CGCFAM_04025
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1815_8 | HRGMv2_1815_8_57 | 55065 | 56171 | - | 3.A.1.2.11 |
| TC | HRGMv2_1815_8 | HRGMv2_1815_8_58 | 56174 | 56806 | - | 3.A.1.2.11 |
| TC | HRGMv2_1815_8 | HRGMv2_1815_8_59 | 56813 | 57688 | - | 3.A.1.2.11 |
| pfam | HRGMv2_1815_8 | HRGMv2_1815_8_60 | 57688 | 58287 | - | DUF2291 |
| TC | HRGMv2_1815_8 | HRGMv2_1815_8_61 | 58290 | 59231 | - | 3.A.1.2.11 |
| TF | HRGMv2_1815_8 | HRGMv2_1815_8_62 | 59415 | 60365 | + | 0039939 |
| CAZyme | HRGMv2_1815_8 | HRGMv2_1815_8_63 | 60424 | 61053 | - | GH23 |
Gene ID: HRGMv2_1815_8_57
Type: TC
Location: 55065 - 56171 (-)
Type: TC
Location: 55065 - 56171 (-)
Gene ID: HRGMv2_1815_8_58
Type: TC
Location: 56174 - 56806 (-)
Type: TC
Location: 56174 - 56806 (-)
Gene ID: HRGMv2_1815_8_59
Type: TC
Location: 56813 - 57688 (-)
Type: TC
Location: 56813 - 57688 (-)
Gene ID: HRGMv2_1815_8_60
Type: pfam
Location: 57688 - 58287 (-)
Type: pfam
Location: 57688 - 58287 (-)
Gene ID: HRGMv2_1815_8_61
Type: TC
Location: 58290 - 59231 (-)
Type: TC
Location: 58290 - 59231 (-)
Gene ID: HRGMv2_1815_8_62
Type: TF
Location: 59415 - 60365 (+)
Type: TF
Location: 59415 - 60365 (+)
Gene ID: HRGMv2_1815_8_63
Type: CAZyme
Location: 60424 - 61053 (-)
Type: CAZyme
Location: 60424 - 61053 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea brenneri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.