Cluster: HRGMv2_1815_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1815
- CGC Family ID: CGCFAM_09873
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1815_4 | HRGMv2_1815_4_147 | 155858 | 156523 | - | 9.B.100.1.1 |
| TF | HRGMv2_1815_4 | HRGMv2_1815_4_148 | 156688 | 157698 | + | HTH_8 |
| NULL(UNKNOWN) | HRGMv2_1815_4 | HRGMv2_1815_4_149 | 157735 | 157902 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1815_4 | HRGMv2_1815_4_150 | 158062 | 159684 | + | 3.A.1.5.5 |
| TC | HRGMv2_1815_4 | HRGMv2_1815_4_151 | 159685 | 160650 | + | 3.A.1.5.5 |
| NULL(UNKNOWN) | HRGMv2_1815_4 | HRGMv2_1815_4_152 | 160944 | 161129 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1815_4 | HRGMv2_1815_4_153 | 161707 | 162636 | + | GT2 |
Gene ID: HRGMv2_1815_4_147
Type: TC
Location: 155858 - 156523 (-)
Type: TC
Location: 155858 - 156523 (-)
Gene ID: HRGMv2_1815_4_148
Type: TF
Location: 156688 - 157698 (+)
Type: TF
Location: 156688 - 157698 (+)
Gene ID: HRGMv2_1815_4_149
Type:
Location: 157735 - 157902 (-)
Type:
Location: 157735 - 157902 (-)
Gene ID: HRGMv2_1815_4_150
Type: TC
Location: 158062 - 159684 (+)
Type: TC
Location: 158062 - 159684 (+)
Gene ID: HRGMv2_1815_4_151
Type: TC
Location: 159685 - 160650 (+)
Type: TC
Location: 159685 - 160650 (+)
Gene ID: HRGMv2_1815_4_152
Type:
Location: 160944 - 161129 (+)
Type:
Location: 160944 - 161129 (+)
Gene ID: HRGMv2_1815_4_153
Type: CAZyme
Location: 161707 - 162636 (+)
Type: CAZyme
Location: 161707 - 162636 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea brenneri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.