Cluster: HRGMv2_1815_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1815
- CGC Family ID: CGCFAM_02170
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1815_4 | HRGMv2_1815_4_47 | 48618 | 49679 | - | 3.A.1.20.2 |
| TC | HRGMv2_1815_4 | HRGMv2_1815_4_48 | 49676 | 51895 | - | 3.A.1.20.2 |
| TC | HRGMv2_1815_4 | HRGMv2_1815_4_49 | 51984 | 53012 | - | 3.A.1.20.3 |
| TF | HRGMv2_1815_4 | HRGMv2_1815_4_50 | 53226 | 54260 | + | LacI |
| pfam | HRGMv2_1815_4 | HRGMv2_1815_4_51 | 54526 | 55419 | + | adh_short | KR | adh_short_C2 |
| CAZyme | HRGMv2_1815_4 | HRGMv2_1815_4_52 | 55512 | 57335 | + | GH15 |
Gene ID: HRGMv2_1815_4_47
Type: TC
Location: 48618 - 49679 (-)
Type: TC
Location: 48618 - 49679 (-)
Gene ID: HRGMv2_1815_4_48
Type: TC
Location: 49676 - 51895 (-)
Type: TC
Location: 49676 - 51895 (-)
Gene ID: HRGMv2_1815_4_49
Type: TC
Location: 51984 - 53012 (-)
Type: TC
Location: 51984 - 53012 (-)
Gene ID: HRGMv2_1815_4_50
Type: TF
Location: 53226 - 54260 (+)
Type: TF
Location: 53226 - 54260 (+)
Gene ID: HRGMv2_1815_4_51
Type: pfam
Location: 54526 - 55419 (+)
Type: pfam
Location: 54526 - 55419 (+)
Gene ID: HRGMv2_1815_4_52
Type: CAZyme
Location: 55512 - 57335 (+)
Type: CAZyme
Location: 55512 - 57335 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea brenneri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.