dbCAN Logo

Cluster: HRGMv2_1814_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1814_5 HRGMv2_1814_5_14 12329 13615 - 2.A.56.1.5
pfam HRGMv2_1814_5 HRGMv2_1814_5_15 13646 14155 - DctQ
TC HRGMv2_1814_5 HRGMv2_1814_5_16 14629 17337 - 3.A.3.4.1
TF HRGMv2_1814_5 HRGMv2_1814_5_17 17761 18708 + LacI
TC HRGMv2_1814_5 HRGMv2_1814_5_18 18882 20303 + 4.A.1.2.4
CAZyme HRGMv2_1814_5 HRGMv2_1814_5_19 20353 22008 + GH13_29
pfam HRGMv2_1814_5 HRGMv2_1814_5_20 22206 22952 + KdgM
TF HRGMv2_1814_5 HRGMv2_1814_5_21 22957 23616 - HTH_6
TC HRGMv2_1814_5 HRGMv2_1814_5_22 23797 25194 + 4.A.2.1.11
CAZyme HRGMv2_1814_5 HRGMv2_1814_5_23 25209 27827 + GH38
CAZyme HRGMv2_1814_5 HRGMv2_1814_5_24 27824 29533 + GH13_18
TC HRGMv2_1814_5 HRGMv2_1814_5_25 29535 30119 + 4.A.2.1.3
Gene ID: HRGMv2_1814_5_14
Type: TC
Location: 12329 - 13615 (-)
Gene ID: HRGMv2_1814_5_15
Type: pfam
Location: 13646 - 14155 (-)
Gene ID: HRGMv2_1814_5_16
Type: TC
Location: 14629 - 17337 (-)
Gene ID: HRGMv2_1814_5_17
Type: TF
Location: 17761 - 18708 (+)
Gene ID: HRGMv2_1814_5_18
Type: TC
Location: 18882 - 20303 (+)
Gene ID: HRGMv2_1814_5_19
Type: CAZyme
Location: 20353 - 22008 (+)
Gene ID: HRGMv2_1814_5_20
Type: pfam
Location: 22206 - 22952 (+)
Gene ID: HRGMv2_1814_5_21
Type: TF
Location: 22957 - 23616 (-)
Gene ID: HRGMv2_1814_5_22
Type: TC
Location: 23797 - 25194 (+)
Gene ID: HRGMv2_1814_5_23
Type: CAZyme
Location: 25209 - 27827 (+)
Gene ID: HRGMv2_1814_5_24
Type: CAZyme
Location: 27824 - 29533 (+)
Gene ID: HRGMv2_1814_5_25
Type: TC
Location: 29535 - 30119 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List