Cluster: HRGMv2_1814_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1814
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1814_4 | HRGMv2_1814_4_16 | 18083 | 18775 | - | 1.B.35.2.2 |
| TC | HRGMv2_1814_4 | HRGMv2_1814_4_17 | 18864 | 20258 | - | 2.A.2.3.9 |
| TC | HRGMv2_1814_4 | HRGMv2_1814_4_18 | 20304 | 21686 | - | 2.A.2.3.9 |
| CAZyme | HRGMv2_1814_4 | HRGMv2_1814_4_19 | 21732 | 23756 | - | GH31_13 |
Gene ID: HRGMv2_1814_4_16
Type: TC
Location: 18083 - 18775 (-)
Type: TC
Location: 18083 - 18775 (-)
Gene ID: HRGMv2_1814_4_17
Type: TC
Location: 18864 - 20258 (-)
Type: TC
Location: 18864 - 20258 (-)
Gene ID: HRGMv2_1814_4_18
Type: TC
Location: 20304 - 21686 (-)
Type: TC
Location: 20304 - 21686 (-)
Gene ID: HRGMv2_1814_4_19
Type: CAZyme
Location: 21732 - 23756 (-)
Type: CAZyme
Location: 21732 - 23756 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_B
Species
Citrobacter_B koseri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1814_4_18 | vegetarian > omnivore | 1.03032 | 0.03303 |