Cluster: HRGMv2_1814_CGC50
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1814
- CGC Family ID: CGCFAM_04024
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1814_26 | HRGMv2_1814_26_86 | 87974 | 89293 | + | 3.A.6.2.1 |
| pfam | HRGMv2_1814_26 | HRGMv2_1814_26_87 | 89300 | 89743 | + | FliJ |
| CAZyme | HRGMv2_1814_26 | HRGMv2_1814_26_88 | 89749 | 91182 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_1814_26 | HRGMv2_1814_26_89 | 91216 | 92157 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1814_26 | HRGMv2_1814_26_90 | 92268 | 93155 | + | GT9 |
| CAZyme | HRGMv2_1814_26 | HRGMv2_1814_26_91 | 93255 | 94328 | - | GT2 |
Gene ID: HRGMv2_1814_26_86
Type: TC
Location: 87974 - 89293 (+)
Type: TC
Location: 87974 - 89293 (+)
Gene ID: HRGMv2_1814_26_87
Type: pfam
Location: 89300 - 89743 (+)
Type: pfam
Location: 89300 - 89743 (+)
Gene ID: HRGMv2_1814_26_88
Type: CAZyme
Location: 89749 - 91182 (+)
Type: CAZyme
Location: 89749 - 91182 (+)
Gene ID: HRGMv2_1814_26_89
Type:
Location: 91216 - 92157 (+)
Type:
Location: 91216 - 92157 (+)
Gene ID: HRGMv2_1814_26_90
Type: CAZyme
Location: 92268 - 93155 (+)
Type: CAZyme
Location: 92268 - 93155 (+)
Gene ID: HRGMv2_1814_26_91
Type: CAZyme
Location: 93255 - 94328 (-)
Type: CAZyme
Location: 93255 - 94328 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_B
Species
Citrobacter_B koseri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.