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Cluster: HRGMv2_1814_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1814_25 HRGMv2_1814_25_39 39804 40124 + 4.A.3.2.1
TC HRGMv2_1814_25 HRGMv2_1814_25_40 40211 41569 + 4.A.3.2.1
TC HRGMv2_1814_25 HRGMv2_1814_25_41 41620 41970 + 4.A.3.2.1
TF HRGMv2_1814_25 HRGMv2_1814_25_42 41978 42820 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_1814_25 HRGMv2_1814_25_43 42944 44299 + GH4
pfam HRGMv2_1814_25 HRGMv2_1814_25_44 44312 45070 + YdjC
TC HRGMv2_1814_25 HRGMv2_1814_25_45 45560 46951 - 2.A.23.1.8
Gene ID: HRGMv2_1814_25_39
Type: TC
Location: 39804 - 40124 (+)
Gene ID: HRGMv2_1814_25_40
Type: TC
Location: 40211 - 41569 (+)
Gene ID: HRGMv2_1814_25_41
Type: TC
Location: 41620 - 41970 (+)
Gene ID: HRGMv2_1814_25_42
Type: TF
Location: 41978 - 42820 (+)
Gene ID: HRGMv2_1814_25_43
Type: CAZyme
Location: 42944 - 44299 (+)
Gene ID: HRGMv2_1814_25_44
Type: pfam
Location: 44312 - 45070 (+)
Gene ID: HRGMv2_1814_25_45
Type: TC
Location: 45560 - 46951 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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