Cluster: HRGMv2_1814_CGC48
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_1814
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1814_22 | HRGMv2_1814_22_325 | 352252 | 353592 | + | 2.A.8.1.8 |
| TC | HRGMv2_1814_22 | HRGMv2_1814_22_326 | 353695 | 354288 | - | 2.A.95.1.5 |
| pfam | HRGMv2_1814_22 | HRGMv2_1814_22_327 | 354480 | 355586 | + | Semialdhyde_dh | Semialdhyde_dhC |
| CAZyme | HRGMv2_1814_22 | HRGMv2_1814_22_328 | 355949 | 358135 | + | CBM48 | GH13_9 |
| CAZyme | HRGMv2_1814_22 | HRGMv2_1814_22_329 | 358132 | 360105 | + | CBM48 | GH13_11 |
| pfam | HRGMv2_1814_22 | HRGMv2_1814_22_330 | 360123 | 361418 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | HRGMv2_1814_22 | HRGMv2_1814_22_331 | 361418 | 362851 | + | GT5 |
| CAZyme | HRGMv2_1814_22 | HRGMv2_1814_22_332 | 362871 | 365318 | + | GT35 |
| pfam | HRGMv2_1814_22 | HRGMv2_1814_22_333 | 365455 | 366963 | - | DAO | DAO_C |
| STP | HRGMv2_1814_22 | HRGMv2_1814_22_334 | 367166 | 367492 | + | Rhodanese |
| TC | HRGMv2_1814_22 | HRGMv2_1814_22_335 | 367568 | 368398 | + | 9.B.104.1.1 |
| TF | HRGMv2_1814_22 | HRGMv2_1814_22_336 | 368514 | 369272 | + | HTH_DeoR |
| TF | HRGMv2_1814_22 | HRGMv2_1814_22_337 | 369317 | 372022 | - | GerE |
| CAZyme | HRGMv2_1814_22 | HRGMv2_1814_22_338 | 372640 | 375033 | + | GT35 |
| CAZyme | HRGMv2_1814_22 | HRGMv2_1814_22_339 | 375043 | 377130 | + | GH77 |
| TC | HRGMv2_1814_22 | HRGMv2_1814_22_340 | 377263 | 378579 | - | 2.A.8.1.4 |
Gene ID: HRGMv2_1814_22_325
Type: TC
Location: 352252 - 353592 (+)
Type: TC
Location: 352252 - 353592 (+)
Gene ID: HRGMv2_1814_22_326
Type: TC
Location: 353695 - 354288 (-)
Type: TC
Location: 353695 - 354288 (-)
Gene ID: HRGMv2_1814_22_327
Type: pfam
Location: 354480 - 355586 (+)
Type: pfam
Location: 354480 - 355586 (+)
Gene ID: HRGMv2_1814_22_328
Type: CAZyme
Location: 355949 - 358135 (+)
Type: CAZyme
Location: 355949 - 358135 (+)
Gene ID: HRGMv2_1814_22_329
Type: CAZyme
Location: 358132 - 360105 (+)
Type: CAZyme
Location: 358132 - 360105 (+)
Gene ID: HRGMv2_1814_22_330
Type: pfam
Location: 360123 - 361418 (+)
Type: pfam
Location: 360123 - 361418 (+)
Gene ID: HRGMv2_1814_22_331
Type: CAZyme
Location: 361418 - 362851 (+)
Type: CAZyme
Location: 361418 - 362851 (+)
Gene ID: HRGMv2_1814_22_332
Type: CAZyme
Location: 362871 - 365318 (+)
Type: CAZyme
Location: 362871 - 365318 (+)
Gene ID: HRGMv2_1814_22_333
Type: pfam
Location: 365455 - 366963 (-)
Type: pfam
Location: 365455 - 366963 (-)
Gene ID: HRGMv2_1814_22_334
Type: STP
Location: 367166 - 367492 (+)
Type: STP
Location: 367166 - 367492 (+)
Gene ID: HRGMv2_1814_22_335
Type: TC
Location: 367568 - 368398 (+)
Type: TC
Location: 367568 - 368398 (+)
Gene ID: HRGMv2_1814_22_336
Type: TF
Location: 368514 - 369272 (+)
Type: TF
Location: 368514 - 369272 (+)
Gene ID: HRGMv2_1814_22_337
Type: TF
Location: 369317 - 372022 (-)
Type: TF
Location: 369317 - 372022 (-)
Gene ID: HRGMv2_1814_22_338
Type: CAZyme
Location: 372640 - 375033 (+)
Type: CAZyme
Location: 372640 - 375033 (+)
Gene ID: HRGMv2_1814_22_339
Type: CAZyme
Location: 375043 - 377130 (+)
Type: CAZyme
Location: 375043 - 377130 (+)
Gene ID: HRGMv2_1814_22_340
Type: TC
Location: 377263 - 378579 (-)
Type: TC
Location: 377263 - 378579 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_B
Species
Citrobacter_B koseri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.