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Cluster: HRGMv2_1814_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1814_3 HRGMv2_1814_3_106 116611 118047 + 2.A.1.3.38
TC HRGMv2_1814_3 HRGMv2_1814_3_107 118122 119366 + 1.A.23.4.5
TF HRGMv2_1814_3 HRGMv2_1814_3_108 119369 120349 - LacI
CAZyme HRGMv2_1814_3 HRGMv2_1814_3_109 120427 121578 - GH179
pfam HRGMv2_1814_3 HRGMv2_1814_3_110 121575 122603 - AP_endonuc_2
TC HRGMv2_1814_3 HRGMv2_1814_3_111 122619 123860 - 2.A.1.10.4
TC HRGMv2_1814_3 HRGMv2_1814_3_112 124058 125452 - 2.A.3.1.1
Gene ID: HRGMv2_1814_3_106
Type: TC
Location: 116611 - 118047 (+)
Gene ID: HRGMv2_1814_3_107
Type: TC
Location: 118122 - 119366 (+)
Gene ID: HRGMv2_1814_3_108
Type: TF
Location: 119369 - 120349 (-)
Gene ID: HRGMv2_1814_3_109
Type: CAZyme
Location: 120427 - 121578 (-)
Gene ID: HRGMv2_1814_3_110
Type: pfam
Location: 121575 - 122603 (-)
Gene ID: HRGMv2_1814_3_111
Type: TC
Location: 122619 - 123860 (-)
Gene ID: HRGMv2_1814_3_112
Type: TC
Location: 124058 - 125452 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1814_3_107 vegan > omnivore 1.00011 0.04054

🧭 Explore Read Mapping of CGC

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