Cluster: HRGMv2_1814_CGC33
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1814
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1814_17 | HRGMv2_1814_17_374 | 392336 | 393769 | - | GH1 |
| TF | HRGMv2_1814_17 | HRGMv2_1814_17_375 | 393890 | 394624 | - | HTH_6 |
| pfam | HRGMv2_1814_17 | HRGMv2_1814_17_376 | 394671 | 394982 | + | ASCH |
| TC | HRGMv2_1814_17 | HRGMv2_1814_17_377 | 395144 | 395803 | + | 1.C.113.1.10 |
Gene ID: HRGMv2_1814_17_374
Type: CAZyme
Location: 392336 - 393769 (-)
Type: CAZyme
Location: 392336 - 393769 (-)
Gene ID: HRGMv2_1814_17_375
Type: TF
Location: 393890 - 394624 (-)
Type: TF
Location: 393890 - 394624 (-)
Gene ID: HRGMv2_1814_17_376
Type: pfam
Location: 394671 - 394982 (+)
Type: pfam
Location: 394671 - 394982 (+)
Gene ID: HRGMv2_1814_17_377
Type: TC
Location: 395144 - 395803 (+)
Type: TC
Location: 395144 - 395803 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_B
Species
Citrobacter_B koseri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1814_17_374 | vegan > omnivore | 2.37146 | 0.00141 |
| HRGMv2_1814_17_374 | vegetarian > omnivore | 1.63234 | 0.00629 |