Cluster: HRGMv2_1814_CGC28
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1814
- CGC Family ID: CGCFAM_00625
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1814_17 | HRGMv2_1814_17_60 | 68815 | 69543 | + | GT51 |
| STP | HRGMv2_1814_17 | HRGMv2_1814_17_61 | 69518 | 70189 | - | Pkinase |
| TC | HRGMv2_1814_17 | HRGMv2_1814_17_62 | 70399 | 70671 | - | 8.A.8.1.5 |
| pfam | HRGMv2_1814_17 | HRGMv2_1814_17_63 | 70668 | 71522 | - | RapZ-like_N | PapZ_C |
| TC | HRGMv2_1814_17 | HRGMv2_1814_17_64 | 71559 | 72050 | - | 4.A.2.1.7 |
| pfam | HRGMv2_1814_17 | HRGMv2_1814_17_65 | 72176 | 72463 | - | Ribosomal_S30AE |
| pfam | HRGMv2_1814_17 | HRGMv2_1814_17_66 | 72486 | 73919 | - | Sigma54_AID | Sigma54_DBD | Sigma54_CBD |
| TC | HRGMv2_1814_17 | HRGMv2_1814_17_67 | 73967 | 74692 | - | 1.B.42.1.2 |
| TC | HRGMv2_1814_17 | HRGMv2_1814_17_68 | 74699 | 75253 | - | 1.B.42.1.2 |
| TC | HRGMv2_1814_17 | HRGMv2_1814_17_69 | 75222 | 75797 | - | 1.B.42.1.2 |
| pfam | HRGMv2_1814_17 | HRGMv2_1814_17_70 | 75794 | 76360 | - | Hydrolase_3 |
| STP | HRGMv2_1814_17 | HRGMv2_1814_17_71 | 76380 | 77366 | - | CBS | CBS | SIS |
| TC | HRGMv2_1814_17 | HRGMv2_1814_17_72 | 77381 | 78358 | - | 2.A.19.5.1 |
| TC | HRGMv2_1814_17 | HRGMv2_1814_17_73 | 78571 | 79383 | + | 3.A.1.27.3 |
| TC | HRGMv2_1814_17 | HRGMv2_1814_17_74 | 79391 | 80173 | + | 3.A.1.27.3 |
| TC | HRGMv2_1814_17 | HRGMv2_1814_17_75 | 80178 | 80729 | + | 3.A.1.27.3 |
| TC | HRGMv2_1814_17 | HRGMv2_1814_17_76 | 80748 | 81383 | + | 3.A.1.27.3 |
| TC | HRGMv2_1814_17 | HRGMv2_1814_17_77 | 81383 | 81676 | + | 3.A.1.27.3 |
Gene ID: HRGMv2_1814_17_60
Type: CAZyme
Location: 68815 - 69543 (+)
Type: CAZyme
Location: 68815 - 69543 (+)
Gene ID: HRGMv2_1814_17_61
Type: STP
Location: 69518 - 70189 (-)
Type: STP
Location: 69518 - 70189 (-)
Gene ID: HRGMv2_1814_17_62
Type: TC
Location: 70399 - 70671 (-)
Type: TC
Location: 70399 - 70671 (-)
Gene ID: HRGMv2_1814_17_63
Type: pfam
Location: 70668 - 71522 (-)
Type: pfam
Location: 70668 - 71522 (-)
Gene ID: HRGMv2_1814_17_64
Type: TC
Location: 71559 - 72050 (-)
Type: TC
Location: 71559 - 72050 (-)
Gene ID: HRGMv2_1814_17_65
Type: pfam
Location: 72176 - 72463 (-)
Type: pfam
Location: 72176 - 72463 (-)
Gene ID: HRGMv2_1814_17_66
Type: pfam
Location: 72486 - 73919 (-)
Type: pfam
Location: 72486 - 73919 (-)
Gene ID: HRGMv2_1814_17_67
Type: TC
Location: 73967 - 74692 (-)
Type: TC
Location: 73967 - 74692 (-)
Gene ID: HRGMv2_1814_17_68
Type: TC
Location: 74699 - 75253 (-)
Type: TC
Location: 74699 - 75253 (-)
Gene ID: HRGMv2_1814_17_69
Type: TC
Location: 75222 - 75797 (-)
Type: TC
Location: 75222 - 75797 (-)
Gene ID: HRGMv2_1814_17_70
Type: pfam
Location: 75794 - 76360 (-)
Type: pfam
Location: 75794 - 76360 (-)
Gene ID: HRGMv2_1814_17_71
Type: STP
Location: 76380 - 77366 (-)
Type: STP
Location: 76380 - 77366 (-)
Gene ID: HRGMv2_1814_17_72
Type: TC
Location: 77381 - 78358 (-)
Type: TC
Location: 77381 - 78358 (-)
Gene ID: HRGMv2_1814_17_73
Type: TC
Location: 78571 - 79383 (+)
Type: TC
Location: 78571 - 79383 (+)
Gene ID: HRGMv2_1814_17_74
Type: TC
Location: 79391 - 80173 (+)
Type: TC
Location: 79391 - 80173 (+)
Gene ID: HRGMv2_1814_17_75
Type: TC
Location: 80178 - 80729 (+)
Type: TC
Location: 80178 - 80729 (+)
Gene ID: HRGMv2_1814_17_76
Type: TC
Location: 80748 - 81383 (+)
Type: TC
Location: 80748 - 81383 (+)
Gene ID: HRGMv2_1814_17_77
Type: TC
Location: 81383 - 81676 (+)
Type: TC
Location: 81383 - 81676 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_B
Species
Citrobacter_B koseri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.