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Cluster: HRGMv2_1814_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1814_16 HRGMv2_1814_16_221 256277 257512 - 3.A.15.2.1
TC HRGMv2_1814_16 HRGMv2_1814_16_222 257469 258854 - 3.A.15.2.1
TC HRGMv2_1814_16 HRGMv2_1814_16_223 258865 259302 - 3.A.15.2.1
pfam HRGMv2_1814_16 HRGMv2_1814_16_224 259660 260553 - QRPTase_C | QRPTase_N
pfam HRGMv2_1814_16 HRGMv2_1814_16_225 260641 261204 + Amidase_2
TC HRGMv2_1814_16 HRGMv2_1814_16_226 261201 262055 + 9.B.125.1.1
CAZyme HRGMv2_1814_16 HRGMv2_1814_16_227 262145 263095 - GH43_26
TC HRGMv2_1814_16 HRGMv2_1814_16_228 263095 264501 - 2.A.2.3.4
TC HRGMv2_1814_16 HRGMv2_1814_16_229 264657 266027 - 2.A.3.1.3
Gene ID: HRGMv2_1814_16_221
Type: TC
Location: 256277 - 257512 (-)
Gene ID: HRGMv2_1814_16_222
Type: TC
Location: 257469 - 258854 (-)
Gene ID: HRGMv2_1814_16_223
Type: TC
Location: 258865 - 259302 (-)
Gene ID: HRGMv2_1814_16_224
Type: pfam
Location: 259660 - 260553 (-)
Gene ID: HRGMv2_1814_16_225
Type: pfam
Location: 260641 - 261204 (+)
Gene ID: HRGMv2_1814_16_226
Type: TC
Location: 261201 - 262055 (+)
Gene ID: HRGMv2_1814_16_227
Type: CAZyme
Location: 262145 - 263095 (-)
Gene ID: HRGMv2_1814_16_228
Type: TC
Location: 263095 - 264501 (-)
Gene ID: HRGMv2_1814_16_229
Type: TC
Location: 264657 - 266027 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1814_16_228 vegetarian > omnivore 1.46934 0.02320

🧭 Explore Read Mapping of CGC

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