Cluster: HRGMv2_1814_CGC24
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1814
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1814_16 | HRGMv2_1814_16_213 | 248278 | 249195 | + | CE11 |
| pfam | HRGMv2_1814_16 | HRGMv2_1814_16_214 | 249597 | 250103 | + | SecM |
| TC | HRGMv2_1814_16 | HRGMv2_1814_16_215 | 250165 | 252870 | + | 3.A.5.1.1 |
Gene ID: HRGMv2_1814_16_213
Type: CAZyme
Location: 248278 - 249195 (+)
Type: CAZyme
Location: 248278 - 249195 (+)
Gene ID: HRGMv2_1814_16_214
Type: pfam
Location: 249597 - 250103 (+)
Type: pfam
Location: 249597 - 250103 (+)
Gene ID: HRGMv2_1814_16_215
Type: TC
Location: 250165 - 252870 (+)
Type: TC
Location: 250165 - 252870 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_B
Species
Citrobacter_B koseri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1814_16_215 | vegetarian > omnivore | 1.02288 | 0.03303 |