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Cluster: HRGMv2_1814_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1814_14 HRGMv2_1814_14_4 2907 3863 + 1.B.22.1.1
TC HRGMv2_1814_14 HRGMv2_1814_14_5 3878 5356 + 3.A.15.1.1
TC HRGMv2_1814_14 HRGMv2_1814_14_6 5356 6564 + 3.A.15.1.1
TC HRGMv2_1814_14 HRGMv2_1814_14_7 6567 7016 + 3.A.15.1.1
TC HRGMv2_1814_14 HRGMv2_1814_14_8 7016 7501 + 3.A.15.1.1
TC HRGMv2_1814_14 HRGMv2_1814_14_9 7494 7874 + 3.A.15.1.1
TC HRGMv2_1814_14 HRGMv2_1814_14_10 7871 8536 + 3.A.15.3.1
TC HRGMv2_1814_14 HRGMv2_1814_14_11 8533 9549 + 3.A.15.1.1
pfam HRGMv2_1814_14 HRGMv2_1814_14_12 9565 10710 + T2SSL | GspL_C
pfam HRGMv2_1814_14 HRGMv2_1814_14_13 10707 11192 + T2SSM
TC HRGMv2_1814_14 HRGMv2_1814_14_14 11189 11986 + 3.A.15.2.1
CAZyme HRGMv2_1814_14 HRGMv2_1814_14_15 12251 14959 + GH18
CAZyme HRGMv2_1814_14 HRGMv2_1814_14_16 15093 15536 + GH23
CAZyme HRGMv2_1814_14 HRGMv2_1814_14_17 15682 17502 + CBM73 | GH19
Gene ID: HRGMv2_1814_14_4
Type: TC
Location: 2907 - 3863 (+)
Gene ID: HRGMv2_1814_14_5
Type: TC
Location: 3878 - 5356 (+)
Gene ID: HRGMv2_1814_14_6
Type: TC
Location: 5356 - 6564 (+)
Gene ID: HRGMv2_1814_14_7
Type: TC
Location: 6567 - 7016 (+)
Gene ID: HRGMv2_1814_14_8
Type: TC
Location: 7016 - 7501 (+)
Gene ID: HRGMv2_1814_14_9
Type: TC
Location: 7494 - 7874 (+)
Gene ID: HRGMv2_1814_14_10
Type: TC
Location: 7871 - 8536 (+)
Gene ID: HRGMv2_1814_14_11
Type: TC
Location: 8533 - 9549 (+)
Gene ID: HRGMv2_1814_14_12
Type: pfam
Location: 9565 - 10710 (+)
Gene ID: HRGMv2_1814_14_13
Type: pfam
Location: 10707 - 11192 (+)
Gene ID: HRGMv2_1814_14_14
Type: TC
Location: 11189 - 11986 (+)
Gene ID: HRGMv2_1814_14_15
Type: CAZyme
Location: 12251 - 14959 (+)
Gene ID: HRGMv2_1814_14_16
Type: CAZyme
Location: 15093 - 15536 (+)
Gene ID: HRGMv2_1814_14_17
Type: CAZyme
Location: 15682 - 17502 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1814_14_7 vegetarian > omnivore 4.37925 0.03303

🧭 Explore Read Mapping of CGC

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