Cluster: HRGMv2_1814_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1814
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1814_3 | HRGMv2_1814_3_11 | 9820 | 11226 | - | 1.B.25.1.13 |
| pfam | HRGMv2_1814_3 | HRGMv2_1814_3_12 | 11670 | 13337 | - | tRNA-synt_1c | tRNA-synt_1c_C | tRNA-synt_1c_C2 |
| TC | HRGMv2_1814_3 | HRGMv2_1814_3_13 | 13659 | 15608 | - | 4.A.1.1.2 |
| pfam | HRGMv2_1814_3 | HRGMv2_1814_3_14 | 15952 | 16752 | + | Glucosamine_iso |
| CAZyme | HRGMv2_1814_3 | HRGMv2_1814_3_15 | 16793 | 17959 | + | CE9 |
Gene ID: HRGMv2_1814_3_11
Type: TC
Location: 9820 - 11226 (-)
Type: TC
Location: 9820 - 11226 (-)
Gene ID: HRGMv2_1814_3_12
Type: pfam
Location: 11670 - 13337 (-)
Type: pfam
Location: 11670 - 13337 (-)
Gene ID: HRGMv2_1814_3_13
Type: TC
Location: 13659 - 15608 (-)
Type: TC
Location: 13659 - 15608 (-)
Gene ID: HRGMv2_1814_3_14
Type: pfam
Location: 15952 - 16752 (+)
Type: pfam
Location: 15952 - 16752 (+)
Gene ID: HRGMv2_1814_3_15
Type: CAZyme
Location: 16793 - 17959 (+)
Type: CAZyme
Location: 16793 - 17959 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_B
Species
Citrobacter_B koseri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1814_3_12 | vegetarian > omnivore | 1.46394 | 0.03859 |