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Cluster: HRGMv2_1814_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1814_11 HRGMv2_1814_11_120 124050 125189 - GH105
TC HRGMv2_1814_11 HRGMv2_1814_11_121 125194 126777 - 2.A.2.5.2
pfam HRGMv2_1814_11 HRGMv2_1814_11_122 127039 127431 - FlhE
TC HRGMv2_1814_11 HRGMv2_1814_11_123 127431 129509 - 3.A.6.2.1
TC HRGMv2_1814_11 HRGMv2_1814_11_124 129502 130653 - 3.A.6.2.1
pfam HRGMv2_1814_11 HRGMv2_1814_11_125 131164 131739 + Fimbrial
pfam HRGMv2_1814_11 HRGMv2_1814_11_126 131889 132581 + PapD_N | PapD_C
TC HRGMv2_1814_11 HRGMv2_1814_11_127 132590 135133 + 1.B.11.3.6
Gene ID: HRGMv2_1814_11_120
Type: CAZyme
Location: 124050 - 125189 (-)
Gene ID: HRGMv2_1814_11_121
Type: TC
Location: 125194 - 126777 (-)
Gene ID: HRGMv2_1814_11_122
Type: pfam
Location: 127039 - 127431 (-)
Gene ID: HRGMv2_1814_11_123
Type: TC
Location: 127431 - 129509 (-)
Gene ID: HRGMv2_1814_11_124
Type: TC
Location: 129502 - 130653 (-)
Gene ID: HRGMv2_1814_11_125
Type: pfam
Location: 131164 - 131739 (+)
Gene ID: HRGMv2_1814_11_126
Type: pfam
Location: 131889 - 132581 (+)
Gene ID: HRGMv2_1814_11_127
Type: TC
Location: 132590 - 135133 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1814_11_121 vegetarian > omnivore 3.00003 0.01389
HRGMv2_1814_11_121 vegetarian > vegan 1.51296 0.03235

🧭 Explore Read Mapping of CGC

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