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Cluster: HRGMv2_1814_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1814_9 HRGMv2_1814_9_49 49508 50386 - 3.A.1.15.10
TC HRGMv2_1814_9 HRGMv2_1814_9_50 50401 51261 - 3.A.1.15.10
TC HRGMv2_1814_9 HRGMv2_1814_9_51 51258 51911 - 3.A.1.15.10
CAZyme HRGMv2_1814_9 HRGMv2_1814_9_52 52216 53316 - GH103
TC HRGMv2_1814_9 HRGMv2_1814_9_53 53572 54135 + 4.A.4.1.1
TC HRGMv2_1814_9 HRGMv2_1814_9_54 54132 55103 + 4.A.4.1.1
TC HRGMv2_1814_9 HRGMv2_1814_9_55 55115 55477 + 4.A.4.1.1
Gene ID: HRGMv2_1814_9_49
Type: TC
Location: 49508 - 50386 (-)
Gene ID: HRGMv2_1814_9_50
Type: TC
Location: 50401 - 51261 (-)
Gene ID: HRGMv2_1814_9_51
Type: TC
Location: 51258 - 51911 (-)
Gene ID: HRGMv2_1814_9_52
Type: CAZyme
Location: 52216 - 53316 (-)
Gene ID: HRGMv2_1814_9_53
Type: TC
Location: 53572 - 54135 (+)
Gene ID: HRGMv2_1814_9_54
Type: TC
Location: 54132 - 55103 (+)
Gene ID: HRGMv2_1814_9_55
Type: TC
Location: 55115 - 55477 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1814_9_49 vegetarian > omnivore 1.42290 0.04896

🧭 Explore Read Mapping of CGC

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