Cluster: HRGMv2_1814_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1814
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1814_9 | HRGMv2_1814_9_17 | 18319 | 19719 | + | 2.A.3.1.4 |
| TF | HRGMv2_1814_9 | HRGMv2_1814_9_18 | 19776 | 20468 | + | GntR |
| CAZyme | HRGMv2_1814_9 | HRGMv2_1814_9_19 | 20475 | 20924 | - | CBM50 |
| STP | HRGMv2_1814_9 | HRGMv2_1814_9_20 | 21115 | 21642 | + | Rhodanese |
| pfam | HRGMv2_1814_9 | HRGMv2_1814_9_21 | 21750 | 22151 | - | Histone_HNS | Histone_HNS_N |
| TC | HRGMv2_1814_9 | HRGMv2_1814_9_22 | 22660 | 23109 | + | 2.A.104.1.1 |
Gene ID: HRGMv2_1814_9_17
Type: TC
Location: 18319 - 19719 (+)
Type: TC
Location: 18319 - 19719 (+)
Gene ID: HRGMv2_1814_9_18
Type: TF
Location: 19776 - 20468 (+)
Type: TF
Location: 19776 - 20468 (+)
Gene ID: HRGMv2_1814_9_19
Type: CAZyme
Location: 20475 - 20924 (-)
Type: CAZyme
Location: 20475 - 20924 (-)
Gene ID: HRGMv2_1814_9_20
Type: STP
Location: 21115 - 21642 (+)
Type: STP
Location: 21115 - 21642 (+)
Gene ID: HRGMv2_1814_9_21
Type: pfam
Location: 21750 - 22151 (-)
Type: pfam
Location: 21750 - 22151 (-)
Gene ID: HRGMv2_1814_9_22
Type: TC
Location: 22660 - 23109 (+)
Type: TC
Location: 22660 - 23109 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_B
Species
Citrobacter_B koseri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.