Cluster: HRGMv2_1813_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_3 | HRGMv2_1813_3_160 | 161913 | 162584 | + | 1.B.48.1.5 |
| pfam | HRGMv2_1813_3 | HRGMv2_1813_3_161 | 162603 | 162959 | + | DUF4810 |
| pfam | HRGMv2_1813_3 | HRGMv2_1813_3_162 | 162956 | 163615 | + | GNA1162-like |
| CAZyme | HRGMv2_1813_3 | HRGMv2_1813_3_163 | 163747 | 165237 | + | GH13_5 |
Gene ID: HRGMv2_1813_3_160
Type: TC
Location: 161913 - 162584 (+)
Type: TC
Location: 161913 - 162584 (+)
Gene ID: HRGMv2_1813_3_161
Type: pfam
Location: 162603 - 162959 (+)
Type: pfam
Location: 162603 - 162959 (+)
Gene ID: HRGMv2_1813_3_162
Type: pfam
Location: 162956 - 163615 (+)
Type: pfam
Location: 162956 - 163615 (+)
Gene ID: HRGMv2_1813_3_163
Type: CAZyme
Location: 163747 - 165237 (+)
Type: CAZyme
Location: 163747 - 165237 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.