Cluster: HRGMv2_1813_CGC56
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_45 | HRGMv2_1813_45_1 | 209 | 1861 | - | 2.A.21.7.2 |
| TC | HRGMv2_1813_45 | HRGMv2_1813_45_2 | 1858 | 2169 | - | 9.B.136.1.1 |
| TC | HRGMv2_1813_45 | HRGMv2_1813_45_3 | 2262 | 4220 | - | 4.C.1.1.6 |
| TC | HRGMv2_1813_45 | HRGMv2_1813_45_4 | 5054 | 6370 | + | 2.A.23.1.1 |
| CAZyme | HRGMv2_1813_45 | HRGMv2_1813_45_5 | 6442 | 7191 | - | CBM50 |
Gene ID: HRGMv2_1813_45_1
Type: TC
Location: 209 - 1861 (-)
Type: TC
Location: 209 - 1861 (-)
Gene ID: HRGMv2_1813_45_2
Type: TC
Location: 1858 - 2169 (-)
Type: TC
Location: 1858 - 2169 (-)
Gene ID: HRGMv2_1813_45_3
Type: TC
Location: 2262 - 4220 (-)
Type: TC
Location: 2262 - 4220 (-)
Gene ID: HRGMv2_1813_45_4
Type: TC
Location: 5054 - 6370 (+)
Type: TC
Location: 5054 - 6370 (+)
Gene ID: HRGMv2_1813_45_5
Type: CAZyme
Location: 6442 - 7191 (-)
Type: CAZyme
Location: 6442 - 7191 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.