Cluster: HRGMv2_1813_CGC55
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1813_37 | HRGMv2_1813_37_11 | 10632 | 12560 | - | GH23 |
| pfam | HRGMv2_1813_37 | HRGMv2_1813_37_12 | 13298 | 13912 | + | DUF4154 |
| STP | HRGMv2_1813_37 | HRGMv2_1813_37_13 | 13909 | 15156 | + | GGDEF |
| TC | HRGMv2_1813_37 | HRGMv2_1813_37_14 | 15192 | 15689 | + | 1.B.6.1.21 |
| TC | HRGMv2_1813_37 | HRGMv2_1813_37_15 | 15830 | 17497 | + | 3.A.1.120.6 |
Gene ID: HRGMv2_1813_37_11
Type: CAZyme
Location: 10632 - 12560 (-)
Type: CAZyme
Location: 10632 - 12560 (-)
Gene ID: HRGMv2_1813_37_12
Type: pfam
Location: 13298 - 13912 (+)
Type: pfam
Location: 13298 - 13912 (+)
Gene ID: HRGMv2_1813_37_13
Type: STP
Location: 13909 - 15156 (+)
Type: STP
Location: 13909 - 15156 (+)
Gene ID: HRGMv2_1813_37_14
Type: TC
Location: 15192 - 15689 (+)
Type: TC
Location: 15192 - 15689 (+)
Gene ID: HRGMv2_1813_37_15
Type: TC
Location: 15830 - 17497 (+)
Type: TC
Location: 15830 - 17497 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.