Cluster: HRGMv2_1813_CGC54
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_30 | HRGMv2_1813_30_18 | 18673 | 20331 | + | 2.A.81.1.5 |
| STP | HRGMv2_1813_30 | HRGMv2_1813_30_19 | 20368 | 21696 | - | Aminotran_1_2 |
| CAZyme | HRGMv2_1813_30 | HRGMv2_1813_30_20 | 21756 | 23825 | - | GH13_19 |
Gene ID: HRGMv2_1813_30_18
Type: TC
Location: 18673 - 20331 (+)
Type: TC
Location: 18673 - 20331 (+)
Gene ID: HRGMv2_1813_30_19
Type: STP
Location: 20368 - 21696 (-)
Type: STP
Location: 20368 - 21696 (-)
Gene ID: HRGMv2_1813_30_20
Type: CAZyme
Location: 21756 - 23825 (-)
Type: CAZyme
Location: 21756 - 23825 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.