Cluster: HRGMv2_1813_CGC52
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_26 | HRGMv2_1813_26_53 | 52255 | 53658 | - | 2.A.3.1.15 |
| CAZyme | HRGMv2_1813_26 | HRGMv2_1813_26_54 | 54026 | 54766 | - | GT26 |
| TC | HRGMv2_1813_26 | HRGMv2_1813_26_55 | 54781 | 56157 | - | 9.B.128.1.1 |
| CAZyme | HRGMv2_1813_26 | HRGMv2_1813_26_56 | 56154 | 57239 | - | GT56 |
| TC | HRGMv2_1813_26 | HRGMv2_1813_26_57 | 57236 | 58486 | - | 2.A.66.2.3 |
Gene ID: HRGMv2_1813_26_53
Type: TC
Location: 52255 - 53658 (-)
Type: TC
Location: 52255 - 53658 (-)
Gene ID: HRGMv2_1813_26_54
Type: CAZyme
Location: 54026 - 54766 (-)
Type: CAZyme
Location: 54026 - 54766 (-)
Gene ID: HRGMv2_1813_26_55
Type: TC
Location: 54781 - 56157 (-)
Type: TC
Location: 54781 - 56157 (-)
Gene ID: HRGMv2_1813_26_56
Type: CAZyme
Location: 56154 - 57239 (-)
Type: CAZyme
Location: 56154 - 57239 (-)
Gene ID: HRGMv2_1813_26_57
Type: TC
Location: 57236 - 58486 (-)
Type: TC
Location: 57236 - 58486 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.