Cluster: HRGMv2_1813_CGC51
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_25 | HRGMv2_1813_25_61 | 69289 | 69690 | - | 1.E.2.1.11 |
| TC | HRGMv2_1813_25 | HRGMv2_1813_25_62 | 69680 | 70006 | - | 1.E.2.1.11 |
| CAZyme | HRGMv2_1813_25 | HRGMv2_1813_25_63 | 70303 | 71802 | + | GH18 |
| TF | HRGMv2_1813_25 | HRGMv2_1813_25_64 | 72164 | 73105 | - | HTH_1 |
| CAZyme | HRGMv2_1813_25 | HRGMv2_1813_25_65 | 73512 | 74105 | + | AA10 |
Gene ID: HRGMv2_1813_25_61
Type: TC
Location: 69289 - 69690 (-)
Type: TC
Location: 69289 - 69690 (-)
Gene ID: HRGMv2_1813_25_62
Type: TC
Location: 69680 - 70006 (-)
Type: TC
Location: 69680 - 70006 (-)
Gene ID: HRGMv2_1813_25_63
Type: CAZyme
Location: 70303 - 71802 (+)
Type: CAZyme
Location: 70303 - 71802 (+)
Gene ID: HRGMv2_1813_25_64
Type: TF
Location: 72164 - 73105 (-)
Type: TF
Location: 72164 - 73105 (-)
Gene ID: HRGMv2_1813_25_65
Type: CAZyme
Location: 73512 - 74105 (+)
Type: CAZyme
Location: 73512 - 74105 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.