Cluster: HRGMv2_1813_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_2 | HRGMv2_1813_2_215 | 228266 | 228577 | + | 4.A.3.2.6 |
| TC | HRGMv2_1813_2 | HRGMv2_1813_2_216 | 228663 | 229982 | + | 4.A.3.2.6 |
| TC | HRGMv2_1813_2 | HRGMv2_1813_2_217 | 229979 | 230308 | + | 4.A.3.2.9 |
| CAZyme | HRGMv2_1813_2 | HRGMv2_1813_2_218 | 230305 | 231708 | + | GH1 |
Gene ID: HRGMv2_1813_2_215
Type: TC
Location: 228266 - 228577 (+)
Type: TC
Location: 228266 - 228577 (+)
Gene ID: HRGMv2_1813_2_216
Type: TC
Location: 228663 - 229982 (+)
Type: TC
Location: 228663 - 229982 (+)
Gene ID: HRGMv2_1813_2_217
Type: TC
Location: 229979 - 230308 (+)
Type: TC
Location: 229979 - 230308 (+)
Gene ID: HRGMv2_1813_2_218
Type: CAZyme
Location: 230305 - 231708 (+)
Type: CAZyme
Location: 230305 - 231708 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.