Cluster: HRGMv2_1813_CGC45
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_22 | HRGMv2_1813_22_8 | 8285 | 9574 | - | 2.A.23.1.7 |
| STP | HRGMv2_1813_22 | HRGMv2_1813_22_9 | 9870 | 11876 | - | EAL | GGDEF |
| TC | HRGMv2_1813_22 | HRGMv2_1813_22_10 | 12124 | 15597 | - | 1.B.55.3.1 |
| CAZyme | HRGMv2_1813_22 | HRGMv2_1813_22_11 | 15579 | 16691 | - | GH8 |
| TC | HRGMv2_1813_22 | HRGMv2_1813_22_12 | 16697 | 19000 | - | 4.D.3.1.6 |
| CAZyme | HRGMv2_1813_22 | HRGMv2_1813_22_13 | 19056 | 21659 | - | GT2 |
Gene ID: HRGMv2_1813_22_8
Type: TC
Location: 8285 - 9574 (-)
Type: TC
Location: 8285 - 9574 (-)
Gene ID: HRGMv2_1813_22_9
Type: STP
Location: 9870 - 11876 (-)
Type: STP
Location: 9870 - 11876 (-)
Gene ID: HRGMv2_1813_22_10
Type: TC
Location: 12124 - 15597 (-)
Type: TC
Location: 12124 - 15597 (-)
Gene ID: HRGMv2_1813_22_11
Type: CAZyme
Location: 15579 - 16691 (-)
Type: CAZyme
Location: 15579 - 16691 (-)
Gene ID: HRGMv2_1813_22_12
Type: TC
Location: 16697 - 19000 (-)
Type: TC
Location: 16697 - 19000 (-)
Gene ID: HRGMv2_1813_22_13
Type: CAZyme
Location: 19056 - 21659 (-)
Type: CAZyme
Location: 19056 - 21659 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.