Cluster: HRGMv2_1813_CGC41
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 11
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1813_19 | HRGMv2_1813_19_37 | 37889 | 38662 | - | GT2 |
| CAZyme | HRGMv2_1813_19 | HRGMv2_1813_19_38 | 38663 | 39940 | - | GT30 |
| CAZyme | HRGMv2_1813_19 | HRGMv2_1813_19_39 | 40066 | 41079 | + | GT9 |
| CAZyme | HRGMv2_1813_19 | HRGMv2_1813_19_40 | 41112 | 42209 | - | GT4 |
| CAZyme | HRGMv2_1813_19 | HRGMv2_1813_19_41 | 42212 | 43339 | - | GT4 |
| CAZyme | HRGMv2_1813_19 | HRGMv2_1813_19_42 | 43336 | 44418 | - | GT9 |
| NULL(UNKNOWN) | HRGMv2_1813_19 | HRGMv2_1813_19_43 | 44630 | 45586 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1813_19 | HRGMv2_1813_19_44 | 45588 | 46685 | + | GT9 |
| CAZyme | HRGMv2_1813_19 | HRGMv2_1813_19_45 | 46687 | 47670 | - | GT2 |
| TC | HRGMv2_1813_19 | HRGMv2_1813_19_46 | 47675 | 48913 | - | 9.B.67.5.1 |
| CAZyme | HRGMv2_1813_19 | HRGMv2_1813_19_47 | 48942 | 50105 | - | GT4 |
| CAZyme | HRGMv2_1813_19 | HRGMv2_1813_19_48 | 50102 | 51067 | - | GT9 |
| CAZyme | HRGMv2_1813_19 | HRGMv2_1813_19_49 | 51070 | 52116 | - | GT9 |
Gene ID: HRGMv2_1813_19_37
Type: CAZyme
Location: 37889 - 38662 (-)
Type: CAZyme
Location: 37889 - 38662 (-)
Gene ID: HRGMv2_1813_19_38
Type: CAZyme
Location: 38663 - 39940 (-)
Type: CAZyme
Location: 38663 - 39940 (-)
Gene ID: HRGMv2_1813_19_39
Type: CAZyme
Location: 40066 - 41079 (+)
Type: CAZyme
Location: 40066 - 41079 (+)
Gene ID: HRGMv2_1813_19_40
Type: CAZyme
Location: 41112 - 42209 (-)
Type: CAZyme
Location: 41112 - 42209 (-)
Gene ID: HRGMv2_1813_19_41
Type: CAZyme
Location: 42212 - 43339 (-)
Type: CAZyme
Location: 42212 - 43339 (-)
Gene ID: HRGMv2_1813_19_42
Type: CAZyme
Location: 43336 - 44418 (-)
Type: CAZyme
Location: 43336 - 44418 (-)
Gene ID: HRGMv2_1813_19_43
Type:
Location: 44630 - 45586 (+)
Type:
Location: 44630 - 45586 (+)
Gene ID: HRGMv2_1813_19_44
Type: CAZyme
Location: 45588 - 46685 (+)
Type: CAZyme
Location: 45588 - 46685 (+)
Gene ID: HRGMv2_1813_19_45
Type: CAZyme
Location: 46687 - 47670 (-)
Type: CAZyme
Location: 46687 - 47670 (-)
Gene ID: HRGMv2_1813_19_46
Type: TC
Location: 47675 - 48913 (-)
Type: TC
Location: 47675 - 48913 (-)
Gene ID: HRGMv2_1813_19_47
Type: CAZyme
Location: 48942 - 50105 (-)
Type: CAZyme
Location: 48942 - 50105 (-)
Gene ID: HRGMv2_1813_19_48
Type: CAZyme
Location: 50102 - 51067 (-)
Type: CAZyme
Location: 50102 - 51067 (-)
Gene ID: HRGMv2_1813_19_49
Type: CAZyme
Location: 51070 - 52116 (-)
Type: CAZyme
Location: 51070 - 52116 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.