Cluster: HRGMv2_1813_CGC39
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_17 | HRGMv2_1813_17_54 | 56319 | 57683 | + | 2.A.1.15.1 |
| TC | HRGMv2_1813_17 | HRGMv2_1813_17_55 | 58211 | 59272 | - | 8.A.5.1.6 |
| TF | HRGMv2_1813_17 | HRGMv2_1813_17_56 | 59369 | 60262 | + | HTH_1 |
| CAZyme | HRGMv2_1813_17 | HRGMv2_1813_17_57 | 60411 | 60962 | + | AA6 |
| TC | HRGMv2_1813_17 | HRGMv2_1813_17_58 | 61626 | 63074 | + | 9.B.34.1.3 |
Gene ID: HRGMv2_1813_17_54
Type: TC
Location: 56319 - 57683 (+)
Type: TC
Location: 56319 - 57683 (+)
Gene ID: HRGMv2_1813_17_55
Type: TC
Location: 58211 - 59272 (-)
Type: TC
Location: 58211 - 59272 (-)
Gene ID: HRGMv2_1813_17_56
Type: TF
Location: 59369 - 60262 (+)
Type: TF
Location: 59369 - 60262 (+)
Gene ID: HRGMv2_1813_17_57
Type: CAZyme
Location: 60411 - 60962 (+)
Type: CAZyme
Location: 60411 - 60962 (+)
Gene ID: HRGMv2_1813_17_58
Type: TC
Location: 61626 - 63074 (+)
Type: TC
Location: 61626 - 63074 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.