Cluster: HRGMv2_1813_CGC38
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_16 | HRGMv2_1813_16_98 | 87622 | 88407 | - | 3.A.1.15.5 |
| TC | HRGMv2_1813_16 | HRGMv2_1813_16_99 | 88404 | 89162 | - | 3.A.1.15.5 |
| TC | HRGMv2_1813_16 | HRGMv2_1813_16_100 | 89241 | 90206 | + | 3.A.1.15.5 |
| CAZyme | HRGMv2_1813_16 | HRGMv2_1813_16_101 | 90228 | 91550 | + | CBM50 |
Gene ID: HRGMv2_1813_16_98
Type: TC
Location: 87622 - 88407 (-)
Type: TC
Location: 87622 - 88407 (-)
Gene ID: HRGMv2_1813_16_99
Type: TC
Location: 88404 - 89162 (-)
Type: TC
Location: 88404 - 89162 (-)
Gene ID: HRGMv2_1813_16_100
Type: TC
Location: 89241 - 90206 (+)
Type: TC
Location: 89241 - 90206 (+)
Gene ID: HRGMv2_1813_16_101
Type: CAZyme
Location: 90228 - 91550 (+)
Type: CAZyme
Location: 90228 - 91550 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.