Cluster: HRGMv2_1813_CGC37
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1813_16 | HRGMv2_1813_16_52 | 47255 | 48262 | + | GT2 |
| pfam | HRGMv2_1813_16 | HRGMv2_1813_16_53 | 48326 | 48571 | + | UPF0181 |
| pfam | HRGMv2_1813_16 | HRGMv2_1813_16_54 | 48605 | 49783 | - | ATP-grasp | CPSase_L_D2 | Dala_Dala_lig_C | PurT_C | RS_preATP-grasp-like |
| TC | HRGMv2_1813_16 | HRGMv2_1813_16_55 | 50025 | 51407 | + | 3.A.18.1.1 |
| pfam | HRGMv2_1813_16 | HRGMv2_1813_16_56 | 51496 | 51819 | + | YebG |
| pfam | HRGMv2_1813_16 | HRGMv2_1813_16_57 | 51859 | 52167 | + | ASCH |
| TC | HRGMv2_1813_16 | HRGMv2_1813_16_58 | 52238 | 52597 | + | 8.B.24.3.2 |
Gene ID: HRGMv2_1813_16_52
Type: CAZyme
Location: 47255 - 48262 (+)
Type: CAZyme
Location: 47255 - 48262 (+)
Gene ID: HRGMv2_1813_16_53
Type: pfam
Location: 48326 - 48571 (+)
Type: pfam
Location: 48326 - 48571 (+)
Gene ID: HRGMv2_1813_16_54
Type: pfam
Location: 48605 - 49783 (-)
Type: pfam
Location: 48605 - 49783 (-)
Gene ID: HRGMv2_1813_16_55
Type: TC
Location: 50025 - 51407 (+)
Type: TC
Location: 50025 - 51407 (+)
Gene ID: HRGMv2_1813_16_56
Type: pfam
Location: 51496 - 51819 (+)
Type: pfam
Location: 51496 - 51819 (+)
Gene ID: HRGMv2_1813_16_57
Type: pfam
Location: 51859 - 52167 (+)
Type: pfam
Location: 51859 - 52167 (+)
Gene ID: HRGMv2_1813_16_58
Type: TC
Location: 52238 - 52597 (+)
Type: TC
Location: 52238 - 52597 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.