Cluster: HRGMv2_1813_CGC35
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1813_14 | HRGMv2_1813_14_117 | 131510 | 132625 | + | GH179 |
| TC | HRGMv2_1813_14 | HRGMv2_1813_14_118 | 132755 | 133681 | + | 3.A.1.2.16 |
| CAZyme | HRGMv2_1813_14 | HRGMv2_1813_14_119 | 133798 | 135234 | - | GH1 |
| TF | HRGMv2_1813_14 | HRGMv2_1813_14_120 | 135371 | 136105 | - | HTH_6 |
| TC | HRGMv2_1813_14 | HRGMv2_1813_14_121 | 136195 | 137502 | - | 2.A.1.14.9 |
Gene ID: HRGMv2_1813_14_117
Type: CAZyme
Location: 131510 - 132625 (+)
Type: CAZyme
Location: 131510 - 132625 (+)
Gene ID: HRGMv2_1813_14_118
Type: TC
Location: 132755 - 133681 (+)
Type: TC
Location: 132755 - 133681 (+)
Gene ID: HRGMv2_1813_14_119
Type: CAZyme
Location: 133798 - 135234 (-)
Type: CAZyme
Location: 133798 - 135234 (-)
Gene ID: HRGMv2_1813_14_120
Type: TF
Location: 135371 - 136105 (-)
Type: TF
Location: 135371 - 136105 (-)
Gene ID: HRGMv2_1813_14_121
Type: TC
Location: 136195 - 137502 (-)
Type: TC
Location: 136195 - 137502 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.