Cluster: HRGMv2_1813_CGC32
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_12 | HRGMv2_1813_12_157 | 172755 | 175061 | - | 2.A.6.8.2 |
| pfam | HRGMv2_1813_12 | HRGMv2_1813_12_158 | 175051 | 175656 | - | LolA | LolA_3 |
| pfam | HRGMv2_1813_12 | HRGMv2_1813_12_159 | 175653 | 176081 | - | 4HBT | 4HBT_2 |
| CAZyme | HRGMv2_1813_12 | HRGMv2_1813_12_160 | 176078 | 177733 | - | GT2 |
Gene ID: HRGMv2_1813_12_157
Type: TC
Location: 172755 - 175061 (-)
Type: TC
Location: 172755 - 175061 (-)
Gene ID: HRGMv2_1813_12_158
Type: pfam
Location: 175051 - 175656 (-)
Type: pfam
Location: 175051 - 175656 (-)
Gene ID: HRGMv2_1813_12_159
Type: pfam
Location: 175653 - 176081 (-)
Type: pfam
Location: 175653 - 176081 (-)
Gene ID: HRGMv2_1813_12_160
Type: CAZyme
Location: 176078 - 177733 (-)
Type: CAZyme
Location: 176078 - 177733 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.