Cluster: HRGMv2_1813_CGC31
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1813_12 | HRGMv2_1813_12_147 | 162904 | 164328 | + | GH23 |
| pfam | HRGMv2_1813_12 | HRGMv2_1813_12_148 | 164391 | 165185 | - | Exo_endo_phos |
| TC | HRGMv2_1813_12 | HRGMv2_1813_12_149 | 165429 | 166604 | - | 2.A.1.2.65 |
Gene ID: HRGMv2_1813_12_147
Type: CAZyme
Location: 162904 - 164328 (+)
Type: CAZyme
Location: 162904 - 164328 (+)
Gene ID: HRGMv2_1813_12_148
Type: pfam
Location: 164391 - 165185 (-)
Type: pfam
Location: 164391 - 165185 (-)
Gene ID: HRGMv2_1813_12_149
Type: TC
Location: 165429 - 166604 (-)
Type: TC
Location: 165429 - 166604 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.