Cluster: HRGMv2_1813_CGC29
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1813_12 | HRGMv2_1813_12_11 | 12033 | 13856 | - | CBM34 | GH13_21 |
| TC | HRGMv2_1813_12 | HRGMv2_1813_12_12 | 14106 | 15371 | + | 1.A.23.4.5 |
| NULL(UNKNOWN) | HRGMv2_1813_12 | HRGMv2_1813_12_13 | 15498 | 15767 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1813_12 | HRGMv2_1813_12_14 | 15801 | 17207 | - | 2.A.3.1.6 |
| TC | HRGMv2_1813_12 | HRGMv2_1813_12_15 | 17279 | 18598 | - | 2.A.26.1.10 |
Gene ID: HRGMv2_1813_12_11
Type: CAZyme
Location: 12033 - 13856 (-)
Type: CAZyme
Location: 12033 - 13856 (-)
Gene ID: HRGMv2_1813_12_12
Type: TC
Location: 14106 - 15371 (+)
Type: TC
Location: 14106 - 15371 (+)
Gene ID: HRGMv2_1813_12_13
Type:
Location: 15498 - 15767 (+)
Type:
Location: 15498 - 15767 (+)
Gene ID: HRGMv2_1813_12_14
Type: TC
Location: 15801 - 17207 (-)
Type: TC
Location: 15801 - 17207 (-)
Gene ID: HRGMv2_1813_12_15
Type: TC
Location: 17279 - 18598 (-)
Type: TC
Location: 17279 - 18598 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.