Cluster: HRGMv2_1813_CGC27
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1813_11 | HRGMv2_1813_11_84 | 103119 | 104036 | + | CE11 |
| pfam | HRGMv2_1813_11 | HRGMv2_1813_11_85 | 104051 | 104575 | - | DciA |
| pfam | HRGMv2_1813_11 | HRGMv2_1813_11_86 | 104671 | 105135 | + | SecM |
| TC | HRGMv2_1813_11 | HRGMv2_1813_11_87 | 105225 | 107936 | + | 3.A.5.1.1 |
Gene ID: HRGMv2_1813_11_84
Type: CAZyme
Location: 103119 - 104036 (+)
Type: CAZyme
Location: 103119 - 104036 (+)
Gene ID: HRGMv2_1813_11_85
Type: pfam
Location: 104051 - 104575 (-)
Type: pfam
Location: 104051 - 104575 (-)
Gene ID: HRGMv2_1813_11_86
Type: pfam
Location: 104671 - 105135 (+)
Type: pfam
Location: 104671 - 105135 (+)
Gene ID: HRGMv2_1813_11_87
Type: TC
Location: 105225 - 107936 (+)
Type: TC
Location: 105225 - 107936 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.