Cluster: HRGMv2_1813_CGC26
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_11 | HRGMv2_1813_11_75 | 92537 | 93619 | + | 9.B.146.1.6 |
| pfam | HRGMv2_1813_11 | HRGMv2_1813_11_76 | 93622 | 94941 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | HRGMv2_1813_11 | HRGMv2_1813_11_77 | 94938 | 96140 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_1813_11 | HRGMv2_1813_11_78 | 96144 | 97208 | + | GT28 |
Gene ID: HRGMv2_1813_11_75
Type: TC
Location: 92537 - 93619 (+)
Type: TC
Location: 92537 - 93619 (+)
Gene ID: HRGMv2_1813_11_76
Type: pfam
Location: 93622 - 94941 (+)
Type: pfam
Location: 93622 - 94941 (+)
Gene ID: HRGMv2_1813_11_77
Type: TC
Location: 94938 - 96140 (+)
Type: TC
Location: 94938 - 96140 (+)
Gene ID: HRGMv2_1813_11_78
Type: CAZyme
Location: 96144 - 97208 (+)
Type: CAZyme
Location: 96144 - 97208 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.