Cluster: HRGMv2_1813_CGC22
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_9 | HRGMv2_1813_9_130 | 138207 | 139067 | - | 3.A.1.15.4 |
| TC | HRGMv2_1813_9 | HRGMv2_1813_9_131 | 139067 | 139927 | - | 3.A.1.15.4 |
| TC | HRGMv2_1813_9 | HRGMv2_1813_9_132 | 139927 | 140817 | - | 3.A.1.15.4 |
| TC | HRGMv2_1813_9 | HRGMv2_1813_9_133 | 140814 | 141758 | - | 3.A.1.15.4 |
| pfam | HRGMv2_1813_9 | HRGMv2_1813_9_134 | 141891 | 142190 | - | GhoS |
| CAZyme | HRGMv2_1813_9 | HRGMv2_1813_9_135 | 142300 | 142965 | + | GH23 |
Gene ID: HRGMv2_1813_9_130
Type: TC
Location: 138207 - 139067 (-)
Type: TC
Location: 138207 - 139067 (-)
Gene ID: HRGMv2_1813_9_131
Type: TC
Location: 139067 - 139927 (-)
Type: TC
Location: 139067 - 139927 (-)
Gene ID: HRGMv2_1813_9_132
Type: TC
Location: 139927 - 140817 (-)
Type: TC
Location: 139927 - 140817 (-)
Gene ID: HRGMv2_1813_9_133
Type: TC
Location: 140814 - 141758 (-)
Type: TC
Location: 140814 - 141758 (-)
Gene ID: HRGMv2_1813_9_134
Type: pfam
Location: 141891 - 142190 (-)
Type: pfam
Location: 141891 - 142190 (-)
Gene ID: HRGMv2_1813_9_135
Type: CAZyme
Location: 142300 - 142965 (+)
Type: CAZyme
Location: 142300 - 142965 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.