Cluster: HRGMv2_1813_CGC2
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1813_1 | HRGMv2_1813_1_36 | 35143 | 37341 | + | AA2 |
| TC | HRGMv2_1813_1 | HRGMv2_1813_1_37 | 37472 | 38890 | - | 2.A.1.1.113 |
| TC | HRGMv2_1813_1 | HRGMv2_1813_1_38 | 39084 | 40274 | - | 2.A.1.2.18 |
Gene ID: HRGMv2_1813_1_36
Type: CAZyme
Location: 35143 - 37341 (+)
Type: CAZyme
Location: 35143 - 37341 (+)
Gene ID: HRGMv2_1813_1_37
Type: TC
Location: 37472 - 38890 (-)
Type: TC
Location: 37472 - 38890 (-)
Gene ID: HRGMv2_1813_1_38
Type: TC
Location: 39084 - 40274 (-)
Type: TC
Location: 39084 - 40274 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.