Cluster: HRGMv2_1813_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_8 | HRGMv2_1813_8_33 | 28721 | 30406 | - | 9.B.33.1.1 |
| pfam | HRGMv2_1813_8 | HRGMv2_1813_8_34 | 30568 | 31137 | - | Pro_isomerase |
| TC | HRGMv2_1813_8 | HRGMv2_1813_8_35 | 31483 | 31833 | + | 4.A.3.2.9 |
| CAZyme | HRGMv2_1813_8 | HRGMv2_1813_8_36 | 31830 | 33137 | + | GH4 |
| TF | HRGMv2_1813_8 | HRGMv2_1813_8_37 | 33234 | 34211 | + | LacI |
| TC | HRGMv2_1813_8 | HRGMv2_1813_8_38 | 34528 | 35712 | + | 2.A.1.7.14 |
Gene ID: HRGMv2_1813_8_33
Type: TC
Location: 28721 - 30406 (-)
Type: TC
Location: 28721 - 30406 (-)
Gene ID: HRGMv2_1813_8_34
Type: pfam
Location: 30568 - 31137 (-)
Type: pfam
Location: 30568 - 31137 (-)
Gene ID: HRGMv2_1813_8_35
Type: TC
Location: 31483 - 31833 (+)
Type: TC
Location: 31483 - 31833 (+)
Gene ID: HRGMv2_1813_8_36
Type: CAZyme
Location: 31830 - 33137 (+)
Type: CAZyme
Location: 31830 - 33137 (+)
Gene ID: HRGMv2_1813_8_37
Type: TF
Location: 33234 - 34211 (+)
Type: TF
Location: 33234 - 34211 (+)
Gene ID: HRGMv2_1813_8_38
Type: TC
Location: 34528 - 35712 (+)
Type: TC
Location: 34528 - 35712 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.