Cluster: HRGMv2_1813_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_7 | HRGMv2_1813_7_92 | 103105 | 104568 | + | 2.A.66.1.22 |
| TF | HRGMv2_1813_7 | HRGMv2_1813_7_93 | 104572 | 105429 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_1813_7 | HRGMv2_1813_7_94 | 105630 | 106937 | + | GH4 |
| TC | HRGMv2_1813_7 | HRGMv2_1813_7_95 | 107019 | 108275 | + | 2.A.1.5.1 |
| NULL(UNKNOWN) | HRGMv2_1813_7 | HRGMv2_1813_7_96 | 108288 | 108482 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1813_7 | HRGMv2_1813_7_97 | 108804 | 111179 | - | PQQ | PQQ | PQQ | PQQ | PQQ | PQQ | PQQ_2 |
| TC | HRGMv2_1813_7 | HRGMv2_1813_7_98 | 111639 | 112628 | + | 8.A.5.1.3 |
Gene ID: HRGMv2_1813_7_92
Type: TC
Location: 103105 - 104568 (+)
Type: TC
Location: 103105 - 104568 (+)
Gene ID: HRGMv2_1813_7_93
Type: TF
Location: 104572 - 105429 (-)
Type: TF
Location: 104572 - 105429 (-)
Gene ID: HRGMv2_1813_7_94
Type: CAZyme
Location: 105630 - 106937 (+)
Type: CAZyme
Location: 105630 - 106937 (+)
Gene ID: HRGMv2_1813_7_95
Type: TC
Location: 107019 - 108275 (+)
Type: TC
Location: 107019 - 108275 (+)
Gene ID: HRGMv2_1813_7_96
Type:
Location: 108288 - 108482 (-)
Type:
Location: 108288 - 108482 (-)
Gene ID: HRGMv2_1813_7_97
Type: pfam
Location: 108804 - 111179 (-)
Type: pfam
Location: 108804 - 111179 (-)
Gene ID: HRGMv2_1813_7_98
Type: TC
Location: 111639 - 112628 (+)
Type: TC
Location: 111639 - 112628 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.