Cluster: HRGMv2_1813_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1813_5 | HRGMv2_1813_5_116 | 130786 | 133152 | - | GH31_2 |
| TC | HRGMv2_1813_5 | HRGMv2_1813_5_117 | 133164 | 134471 | - | 2.A.1.14.2 |
| TF | HRGMv2_1813_5 | HRGMv2_1813_5_118 | 134837 | 135919 | + | LacI |
| NULL(UNKNOWN) | HRGMv2_1813_5 | HRGMv2_1813_5_119 | 136385 | 136765 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1813_5 | HRGMv2_1813_5_120 | 136765 | 142830 | - | 1.C.75.1.4 |
| TC | HRGMv2_1813_5 | HRGMv2_1813_5_121 | 142915 | 144558 | - | 1.B.20.1.3 |
Gene ID: HRGMv2_1813_5_116
Type: CAZyme
Location: 130786 - 133152 (-)
Type: CAZyme
Location: 130786 - 133152 (-)
Gene ID: HRGMv2_1813_5_117
Type: TC
Location: 133164 - 134471 (-)
Type: TC
Location: 133164 - 134471 (-)
Gene ID: HRGMv2_1813_5_118
Type: TF
Location: 134837 - 135919 (+)
Type: TF
Location: 134837 - 135919 (+)
Gene ID: HRGMv2_1813_5_119
Type:
Location: 136385 - 136765 (-)
Type:
Location: 136385 - 136765 (-)
Gene ID: HRGMv2_1813_5_120
Type: TC
Location: 136765 - 142830 (-)
Type: TC
Location: 136765 - 142830 (-)
Gene ID: HRGMv2_1813_5_121
Type: TC
Location: 142915 - 144558 (-)
Type: TC
Location: 142915 - 144558 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.