Cluster: HRGMv2_1813_CGC1
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1813_1 | HRGMv2_1813_1_2 | 316 | 963 | + | GH23 |
| pfam | HRGMv2_1813_1 | HRGMv2_1813_1_3 | 960 | 1241 | + | TrbC |
| TC | HRGMv2_1813_1 | HRGMv2_1813_1_4 | 1253 | 4000 | + | 3.A.7.3.1 |
Gene ID: HRGMv2_1813_1_2
Type: CAZyme
Location: 316 - 963 (+)
Type: CAZyme
Location: 316 - 963 (+)
Gene ID: HRGMv2_1813_1_3
Type: pfam
Location: 960 - 1241 (+)
Type: pfam
Location: 960 - 1241 (+)
Gene ID: HRGMv2_1813_1_4
Type: TC
Location: 1253 - 4000 (+)
Type: TC
Location: 1253 - 4000 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.