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Cluster: HRGMv2_1806_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1806_10 HRGMv2_1806_10_5 3602 4741 + 3.A.1.11.1
TC HRGMv2_1806_10 HRGMv2_1806_10_6 4725 5585 + 3.A.1.11.1
TC HRGMv2_1806_10 HRGMv2_1806_10_7 5582 6361 + 3.A.1.11.1
TC HRGMv2_1806_10 HRGMv2_1806_10_8 6568 8928 - 1.B.14.1.20
STP HRGMv2_1806_10 HRGMv2_1806_10_9 9054 10025 - FecR
STP HRGMv2_1806_10 HRGMv2_1806_10_10 10022 10555 - Sigma70_r2 | Sigma70_r4_2
TC HRGMv2_1806_10 HRGMv2_1806_10_11 10814 12187 + 2.A.3.2.2
TC HRGMv2_1806_10 HRGMv2_1806_10_12 12415 13479 + 3.A.1.11.1
peptidase HRGMv2_1806_10 HRGMv2_1806_10_13 13541 14083 - S09.UNW
CAZyme HRGMv2_1806_10 HRGMv2_1806_10_14 14152 15171 - GH3
Gene ID: HRGMv2_1806_10_5
Type: TC
Location: 3602 - 4741 (+)
Gene ID: HRGMv2_1806_10_6
Type: TC
Location: 4725 - 5585 (+)
Gene ID: HRGMv2_1806_10_7
Type: TC
Location: 5582 - 6361 (+)
Gene ID: HRGMv2_1806_10_8
Type: TC
Location: 6568 - 8928 (-)
Gene ID: HRGMv2_1806_10_9
Type: STP
Location: 9054 - 10025 (-)
Gene ID: HRGMv2_1806_10_10
Type: STP
Location: 10022 - 10555 (-)
Gene ID: HRGMv2_1806_10_11
Type: TC
Location: 10814 - 12187 (+)
Gene ID: HRGMv2_1806_10_12
Type: TC
Location: 12415 - 13479 (+)
Gene ID: HRGMv2_1806_10_13
Type: peptidase
Location: 13541 - 14083 (-)
Gene ID: HRGMv2_1806_10_14
Type: CAZyme
Location: 14152 - 15171 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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