Cluster: HRGMv2_1806_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1806
- CGC Family ID: CGCFAM_00432
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1806_105 | HRGMv2_1806_105_13 | 8457 | 9395 | + | GH73 |
| pfam | HRGMv2_1806_105 | HRGMv2_1806_105_14 | 10029 | 11714 | + | Flg_bb_rod | Flg_bbr_C | flgK_1st_1 | FlgK_D1 |
| pfam | HRGMv2_1806_105 | HRGMv2_1806_105_15 | 11730 | 12710 | + | Flagellin_N |
| TC | HRGMv2_1806_105 | HRGMv2_1806_105_16 | 12797 | 13582 | - | 3.A.6.2.1 |
| TC | HRGMv2_1806_105 | HRGMv2_1806_105_17 | 13591 | 13860 | - | 3.A.6.2.1 |
| TC | HRGMv2_1806_105 | HRGMv2_1806_105_18 | 13886 | 13972 | - | 3.A.6.2.1 |
Gene ID: HRGMv2_1806_105_13
Type: CAZyme
Location: 8457 - 9395 (+)
Type: CAZyme
Location: 8457 - 9395 (+)
Gene ID: HRGMv2_1806_105_14
Type: pfam
Location: 10029 - 11714 (+)
Type: pfam
Location: 10029 - 11714 (+)
Gene ID: HRGMv2_1806_105_15
Type: pfam
Location: 11730 - 12710 (+)
Type: pfam
Location: 11730 - 12710 (+)
Gene ID: HRGMv2_1806_105_16
Type: TC
Location: 12797 - 13582 (-)
Type: TC
Location: 12797 - 13582 (-)
Gene ID: HRGMv2_1806_105_17
Type: TC
Location: 13591 - 13860 (-)
Type: TC
Location: 13591 - 13860 (-)
Gene ID: HRGMv2_1806_105_18
Type: TC
Location: 13886 - 13972 (-)
Type: TC
Location: 13886 - 13972 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Hafnia
Species
Hafnia protea
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.