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Cluster: HRGMv2_1806_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1806_32 HRGMv2_1806_32_17 19735 21609 + 4.A.1.2.2
CAZyme HRGMv2_1806_32 HRGMv2_1806_32_18 21613 23007 + GH1
pfam HRGMv2_1806_32 HRGMv2_1806_32_19 23286 24179 + SurE
TF HRGMv2_1806_32 HRGMv2_1806_32_20 24327 24746 + MarR
TC HRGMv2_1806_32 HRGMv2_1806_32_21 24789 26138 + 2.A.66.1.7
TC HRGMv2_1806_32 HRGMv2_1806_32_22 26299 27906 + 3.A.1.5.41
NULL(UNKNOWN) HRGMv2_1806_32 HRGMv2_1806_32_23 27973 28131 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1806_32 HRGMv2_1806_32_24 28377 30704 - GH3
Gene ID: HRGMv2_1806_32_17
Type: TC
Location: 19735 - 21609 (+)
Gene ID: HRGMv2_1806_32_18
Type: CAZyme
Location: 21613 - 23007 (+)
Gene ID: HRGMv2_1806_32_19
Type: pfam
Location: 23286 - 24179 (+)
Gene ID: HRGMv2_1806_32_20
Type: TF
Location: 24327 - 24746 (+)
Gene ID: HRGMv2_1806_32_21
Type: TC
Location: 24789 - 26138 (+)
Gene ID: HRGMv2_1806_32_22
Type: TC
Location: 26299 - 27906 (+)
Gene ID: HRGMv2_1806_32_23
Type:
Location: 27973 - 28131 (-)
Gene ID: HRGMv2_1806_32_24
Type: CAZyme
Location: 28377 - 30704 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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