Cluster: HRGMv2_1806_CGC1
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_1806
- CGC Family ID: CGCFAM_00698
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1806_1 | HRGMv2_1806_1_54 | 50596 | 51807 | - | GT30 |
| NULL(UNKNOWN) | HRGMv2_1806_1 | HRGMv2_1806_1_55 | 51885 | 52010 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1806_1 | HRGMv2_1806_1_56 | 52312 | 53385 | + | GT9 |
| CAZyme | HRGMv2_1806_1 | HRGMv2_1806_1_57 | 53382 | 54509 | + | GT4 |
| pfam | HRGMv2_1806_1 | HRGMv2_1806_1_58 | 54502 | 55299 | + | Kdo |
| CAZyme | HRGMv2_1806_1 | HRGMv2_1806_1_59 | 55338 | 56345 | + | GT8 |
| CAZyme | HRGMv2_1806_1 | HRGMv2_1806_1_60 | 56352 | 57359 | + | GT8 |
| pfam | HRGMv2_1806_1 | HRGMv2_1806_1_61 | 57364 | 58062 | + | ABC1 | WaaY |
| CAZyme | HRGMv2_1806_1 | HRGMv2_1806_1_62 | 58101 | 59135 | + | GT8 |
| CAZyme | HRGMv2_1806_1 | HRGMv2_1806_1_63 | 59188 | 59961 | + | GT25 |
| TC | HRGMv2_1806_1 | HRGMv2_1806_1_64 | 60025 | 61305 | + | 9.B.67.5.1 |
| CAZyme | HRGMv2_1806_1 | HRGMv2_1806_1_65 | 61338 | 62306 | - | GT9 |
| CAZyme | HRGMv2_1806_1 | HRGMv2_1806_1_66 | 62306 | 63355 | - | GT9 |
Gene ID: HRGMv2_1806_1_54
Type: CAZyme
Location: 50596 - 51807 (-)
Type: CAZyme
Location: 50596 - 51807 (-)
Gene ID: HRGMv2_1806_1_55
Type:
Location: 51885 - 52010 (+)
Type:
Location: 51885 - 52010 (+)
Gene ID: HRGMv2_1806_1_56
Type: CAZyme
Location: 52312 - 53385 (+)
Type: CAZyme
Location: 52312 - 53385 (+)
Gene ID: HRGMv2_1806_1_57
Type: CAZyme
Location: 53382 - 54509 (+)
Type: CAZyme
Location: 53382 - 54509 (+)
Gene ID: HRGMv2_1806_1_58
Type: pfam
Location: 54502 - 55299 (+)
Type: pfam
Location: 54502 - 55299 (+)
Gene ID: HRGMv2_1806_1_59
Type: CAZyme
Location: 55338 - 56345 (+)
Type: CAZyme
Location: 55338 - 56345 (+)
Gene ID: HRGMv2_1806_1_60
Type: CAZyme
Location: 56352 - 57359 (+)
Type: CAZyme
Location: 56352 - 57359 (+)
Gene ID: HRGMv2_1806_1_61
Type: pfam
Location: 57364 - 58062 (+)
Type: pfam
Location: 57364 - 58062 (+)
Gene ID: HRGMv2_1806_1_62
Type: CAZyme
Location: 58101 - 59135 (+)
Type: CAZyme
Location: 58101 - 59135 (+)
Gene ID: HRGMv2_1806_1_63
Type: CAZyme
Location: 59188 - 59961 (+)
Type: CAZyme
Location: 59188 - 59961 (+)
Gene ID: HRGMv2_1806_1_64
Type: TC
Location: 60025 - 61305 (+)
Type: TC
Location: 60025 - 61305 (+)
Gene ID: HRGMv2_1806_1_65
Type: CAZyme
Location: 61338 - 62306 (-)
Type: CAZyme
Location: 61338 - 62306 (-)
Gene ID: HRGMv2_1806_1_66
Type: CAZyme
Location: 62306 - 63355 (-)
Type: CAZyme
Location: 62306 - 63355 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Hafnia
Species
Hafnia protea
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.