Cluster: HRGMv2_1802_CGC1
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1802
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1802_1 | HRGMv2_1802_1_41 | 37548 | 38960 | - | 2.A.1.3.26 |
| TC | HRGMv2_1802_1 | HRGMv2_1802_1_42 | 38957 | 42037 | - | 2.A.6.2.12 |
| TC | HRGMv2_1802_1 | HRGMv2_1802_1_43 | 42038 | 45160 | - | 2.A.6.2.12 |
| TC | HRGMv2_1802_1 | HRGMv2_1802_1_44 | 45160 | 46248 | - | 8.A.1.6.2 |
| pfam | HRGMv2_1802_1 | HRGMv2_1802_1_45 | 46845 | 48197 | - | HSP70 | HSP70 |
| STP | HRGMv2_1802_1 | HRGMv2_1802_1_46 | 48334 | 49203 | + | AlkA_N | HhH-GPD |
| TC | HRGMv2_1802_1 | HRGMv2_1802_1_47 | 49171 | 52500 | - | 9.B.34.1.1 |
| pfam | HRGMv2_1802_1 | HRGMv2_1802_1_48 | 52816 | 53457 | + | PRK |
| pfam | HRGMv2_1802_1 | HRGMv2_1802_1_49 | 53549 | 54130 | + | DCD_N | DCD |
| TC | HRGMv2_1802_1 | HRGMv2_1802_1_50 | 54157 | 56007 | + | 9.B.22.2.2 |
| TC | HRGMv2_1802_1 | HRGMv2_1802_1_51 | 56052 | 57653 | - | 2.A.109.2.3 |
| TC | HRGMv2_1802_1 | HRGMv2_1802_1_52 | 58291 | 59430 | + | 1.B.18.3.1 |
| pfam | HRGMv2_1802_1 | HRGMv2_1802_1_53 | 59436 | 59885 | + | LMWPc |
| TC | HRGMv2_1802_1 | HRGMv2_1802_1_54 | 59882 | 62044 | + | 8.A.3.3.2 |
| CAZyme | HRGMv2_1802_1 | HRGMv2_1802_1_55 | 62122 | 62964 | + | GT2 |
| pfam | HRGMv2_1802_1 | HRGMv2_1802_1_56 | 62967 | 63455 | + | Hexapep |
| CAZyme | HRGMv2_1802_1 | HRGMv2_1802_1_57 | 63452 | 64669 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_1802_1 | HRGMv2_1802_1_58 | 64644 | 65861 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1802_1 | HRGMv2_1802_1_59 | 65867 | 66613 | + | GT2 |
Gene ID: HRGMv2_1802_1_41
Type: TC
Location: 37548 - 38960 (-)
Type: TC
Location: 37548 - 38960 (-)
Gene ID: HRGMv2_1802_1_42
Type: TC
Location: 38957 - 42037 (-)
Type: TC
Location: 38957 - 42037 (-)
Gene ID: HRGMv2_1802_1_43
Type: TC
Location: 42038 - 45160 (-)
Type: TC
Location: 42038 - 45160 (-)
Gene ID: HRGMv2_1802_1_44
Type: TC
Location: 45160 - 46248 (-)
Type: TC
Location: 45160 - 46248 (-)
Gene ID: HRGMv2_1802_1_45
Type: pfam
Location: 46845 - 48197 (-)
Type: pfam
Location: 46845 - 48197 (-)
Gene ID: HRGMv2_1802_1_46
Type: STP
Location: 48334 - 49203 (+)
Type: STP
Location: 48334 - 49203 (+)
Gene ID: HRGMv2_1802_1_47
Type: TC
Location: 49171 - 52500 (-)
Type: TC
Location: 49171 - 52500 (-)
Gene ID: HRGMv2_1802_1_48
Type: pfam
Location: 52816 - 53457 (+)
Type: pfam
Location: 52816 - 53457 (+)
Gene ID: HRGMv2_1802_1_49
Type: pfam
Location: 53549 - 54130 (+)
Type: pfam
Location: 53549 - 54130 (+)
Gene ID: HRGMv2_1802_1_50
Type: TC
Location: 54157 - 56007 (+)
Type: TC
Location: 54157 - 56007 (+)
Gene ID: HRGMv2_1802_1_51
Type: TC
Location: 56052 - 57653 (-)
Type: TC
Location: 56052 - 57653 (-)
Gene ID: HRGMv2_1802_1_52
Type: TC
Location: 58291 - 59430 (+)
Type: TC
Location: 58291 - 59430 (+)
Gene ID: HRGMv2_1802_1_53
Type: pfam
Location: 59436 - 59885 (+)
Type: pfam
Location: 59436 - 59885 (+)
Gene ID: HRGMv2_1802_1_54
Type: TC
Location: 59882 - 62044 (+)
Type: TC
Location: 59882 - 62044 (+)
Gene ID: HRGMv2_1802_1_55
Type: CAZyme
Location: 62122 - 62964 (+)
Type: CAZyme
Location: 62122 - 62964 (+)
Gene ID: HRGMv2_1802_1_56
Type: pfam
Location: 62967 - 63455 (+)
Type: pfam
Location: 62967 - 63455 (+)
Gene ID: HRGMv2_1802_1_57
Type: CAZyme
Location: 63452 - 64669 (+)
Type: CAZyme
Location: 63452 - 64669 (+)
Gene ID: HRGMv2_1802_1_58
Type:
Location: 64644 - 65861 (+)
Type:
Location: 64644 - 65861 (+)
Gene ID: HRGMv2_1802_1_59
Type: CAZyme
Location: 65867 - 66613 (+)
Type: CAZyme
Location: 65867 - 66613 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter meridianamericanus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.