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Cluster: HRGMv2_1797_CGC53

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1797_12 HRGMv2_1797_12_71 76730 78079 + 2.A.40.7.5
TC HRGMv2_1797_12 HRGMv2_1797_12_72 78236 79882 + 2.A.36.3.1
NULL(UNKNOWN) HRGMv2_1797_12 HRGMv2_1797_12_73 80133 80597 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1797_12 HRGMv2_1797_12_74 80674 81564 - HTH_1
TC HRGMv2_1797_12 HRGMv2_1797_12_75 81666 82076 + 1.E.14.1.9
TC HRGMv2_1797_12 HRGMv2_1797_12_76 82069 82758 + 2.A.122.1.5
CAZyme HRGMv2_1797_12 HRGMv2_1797_12_77 82773 84062 - GH177
pfam HRGMv2_1797_12 HRGMv2_1797_12_78 84305 85252 + DUF4431
NULL(UNKNOWN) HRGMv2_1797_12 HRGMv2_1797_12_79 85301 85417 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1797_12 HRGMv2_1797_12_80 85465 87114 - 2.A.21.7.2
TC HRGMv2_1797_12 HRGMv2_1797_12_81 87111 87425 - 9.B.136.1.1
TC HRGMv2_1797_12 HRGMv2_1797_12_82 87669 89627 - 4.C.1.1.6
pfam HRGMv2_1797_12 HRGMv2_1797_12_83 90061 91497 + Cytochrom_C552
pfam HRGMv2_1797_12 HRGMv2_1797_12_84 91542 92108 + Cytochrome_C554 | Cytochrom_c_NrfB-like
TC HRGMv2_1797_12 HRGMv2_1797_12_85 92105 92776 + 5.A.3.5.2
TC HRGMv2_1797_12 HRGMv2_1797_12_86 92773 93729 + 5.A.3.5.2
TC HRGMv2_1797_12 HRGMv2_1797_12_87 93774 95951 + 9.B.14.1.3
pfam HRGMv2_1797_12 HRGMv2_1797_12_88 95948 96568 + TPR_CcmH_CycH
TC HRGMv2_1797_12 HRGMv2_1797_12_89 96913 98223 + 2.A.23.1.1
pfam HRGMv2_1797_12 HRGMv2_1797_12_90 98328 99017 - Sel1 | Sel1 | Sel1 | Sel1
TC HRGMv2_1797_12 HRGMv2_1797_12_91 99121 100800 - 3.D.1.9.2
TC HRGMv2_1797_12 HRGMv2_1797_12_92 100849 101268 - 3.D.1.9.2
Gene ID: HRGMv2_1797_12_71
Type: TC
Location: 76730 - 78079 (+)
Gene ID: HRGMv2_1797_12_72
Type: TC
Location: 78236 - 79882 (+)
Gene ID: HRGMv2_1797_12_73
Type:
Location: 80133 - 80597 (+)
Gene ID: HRGMv2_1797_12_74
Type: TF
Location: 80674 - 81564 (-)
Gene ID: HRGMv2_1797_12_75
Type: TC
Location: 81666 - 82076 (+)
Gene ID: HRGMv2_1797_12_76
Type: TC
Location: 82069 - 82758 (+)
Gene ID: HRGMv2_1797_12_77
Type: CAZyme
Location: 82773 - 84062 (-)
Gene ID: HRGMv2_1797_12_78
Type: pfam
Location: 84305 - 85252 (+)
Gene ID: HRGMv2_1797_12_79
Type:
Location: 85301 - 85417 (+)
Gene ID: HRGMv2_1797_12_80
Type: TC
Location: 85465 - 87114 (-)
Gene ID: HRGMv2_1797_12_81
Type: TC
Location: 87111 - 87425 (-)
Gene ID: HRGMv2_1797_12_82
Type: TC
Location: 87669 - 89627 (-)
Gene ID: HRGMv2_1797_12_83
Type: pfam
Location: 90061 - 91497 (+)
Gene ID: HRGMv2_1797_12_84
Type: pfam
Location: 91542 - 92108 (+)
Gene ID: HRGMv2_1797_12_85
Type: TC
Location: 92105 - 92776 (+)
Gene ID: HRGMv2_1797_12_86
Type: TC
Location: 92773 - 93729 (+)
Gene ID: HRGMv2_1797_12_87
Type: TC
Location: 93774 - 95951 (+)
Gene ID: HRGMv2_1797_12_88
Type: pfam
Location: 95948 - 96568 (+)
Gene ID: HRGMv2_1797_12_89
Type: TC
Location: 96913 - 98223 (+)
Gene ID: HRGMv2_1797_12_90
Type: pfam
Location: 98328 - 99017 (-)
Gene ID: HRGMv2_1797_12_91
Type: TC
Location: 99121 - 100800 (-)
Gene ID: HRGMv2_1797_12_92
Type: TC
Location: 100849 - 101268 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1797_12_76 vegetarian > omnivore 1.83177 0.02833

🧭 Explore Read Mapping of CGC

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